Package 'fishdata'

Title: A Small Collection of Fish Population Datasets
Description: A collection of four datasets based around the population dynamics of migratory fish. Datasets contain both basic size information on a per fish basis, as well as otolith data that contains a per day record of fish growth history. All data in this package was collected by the author, from 2015-2016, in the Wellington region of New Zealand.
Authors: Conor Neilson [aut, cre]
Maintainer: Conor Neilson <[email protected]>
License: GPL-3
Version: 1.0.2
Built: 2024-09-05 03:37:27 UTC
Source: https://github.com/condwanaland/fishdata

Help Index


Growth data of adult fish

Description

A dataset containing daily age and growth data for adult Galaxis maculatus.

Usage

adult_growth

Format

A dataset containing 16795 rows and 4 variables

fish_code

Foreign key, matches to 'adults'. Identifies the fish being measured.

period

a count of each otolith increment. Counts a day in the fishes life

position

the distance of the increment from the centre of the otolith

distance

the distance of the increment from the previous increment

Examples

data(adult_growth)

Adult fish metrics data

Description

A dataset containing metrics data for adult Galaxis maculatus.

Usage

adult_metrics

Format

A dataset containing 48 rows and 6 variables

fish_id

a unique identifier for each fish

standard_length

standard length of the fish (distance from posterior to caudal peduncle), cm

body_depth

body depth of the fish at its maximum point, cm

age

Age of fish when caught (days)

birthdate

Day fish hatched

growth_rate

Average daily growth of fish (mm/day)

Examples

data(adult_metrics)

Base table of adult fish sample sites and dates.

Description

A dataset containing base location and time catch information for adult Galaxis maculatus.

Usage

adults

Format

A dataset containing 48 rows and 4 variables

fish_code

Primary key, uniquely identifies a fish

site

Site where fish was caught

day

Day group fish was caught on (H1 = 1st day fishing, H3 = 3rd day fishing). Used for by-day grouping analysis. For actual catch date see 'catch_date'

catch_date

Date that the fish was caught on

Examples

data(adults)

Growth data of juvenile fish

Description

A dataset containing daily growth data for juvenile Galaxis maculatus.

Usage

juvenile_growth

Format

A dataset containing 87581 rows and 5 variables

fish_code

Foreign key, links with 'juveniles'

otolith_code

Alternate key

period

a count of each otolith increment. Counts a day in the fishes life

position

the distance of the increment from the centre of the otolith

distance

the distance of the increment from the previous increment

Examples

data(juvenile_growth)

Juvenile fish metrics data

Description

A dataset containing metrics data for juvenile Galaxis maculatus.

Usage

juvenile_metrics

Format

A dataset containing 496 rows and 8 variables

fish_code

Foreign key (matches with 'juveniles')

standard_length

standard length of the fish (distance from posterior to caudal peduncle), cm

body_depth

body depth of the fish at its maximum point, cm

age

Age of fish when caught (days)

birthdate

Day fish hatched

growth_rate

Average daily growth of fish (mm/day)

growth_rate

Average daily growth of fish over first 10 days of life (mm/day)

growth_rate

Average daily growth of fish over last 10 days of life (mm/day)

Examples

data(juvenile_metrics)

Base table of juvenile fish sample sites and dates.

Description

A dataset containing base location and time catch information for juvenile Galaxis maculatus.

Usage

juveniles

Format

A dataset containing 496 rows and 7 variables

fish_code

Primary key, uniquely identifies each fish

fish

Alternate key

otolith_code

Alternate key

site

Site that fish was caught on

day

Day group that the fish was collected on (1 = 1st fishing day, 5 = 5th fishing day). For exact catch date, see 'catch_date'

month

Month that the fish was collected on

catch_date

Day that fish was caught on

Examples

data(juveniles)